At this point, you'll have to leave them together...you'll tear the good ones apart by removing the bad one if it's securely stuck together. That's why when I did
breed snakes, I always separated all eggs laid (carefully! there is a technique to it) so the bad ones can easily be removed. You're too late, so you'll have to wait
it out. It is still possible for good eggs to hatch while stuck together with rotten neighbors, as long as the bad one(s) don't become infested with flies/larvae.
Mold doesn't usually affect good eggs, but insects are another matter. Hope it doesn't stink too bad?