Just in case anyone was wondering, after two week of baytril every other day and not a huge change in her eyes size, she was taken off the medicine a while ago and I am just watching her to see if anything changes(gets worse) now. In conclusion though she DOES have a slightly narrow skull compared to a few other balls and my vet thinks it's just her and not some sort of infection.

So that's good news for me and I hope she is just normal in her own special way.