I found a very interesting article about what genetically causes different colors and patterns on a rat's coat and just wanted to share.

You can read the article here:http://www.ratbehavior.org/CoatColorMutations.htm

I found this section on the Red Eyed Dilution particularly fascinating:

"Mutations in melanosome formation:

A problem in the lineage of cells leading to melanosomes: the red eyed dilution allele

Melanosomes are tiny little vesicles found inside the pigment cell. Pigments are assembled inside these little melanosomes, which are then transported to the edge of the pigment cell and deposit their pigment in the growing hair.

Melanosomes are actually part of a family of related "cell organs" (organelles) (Orlow 1995, 1998), that includes lysosomes and platelet dense granules. Lysosomes are little vesicles inside cells that contain enzymes involved in breaking down metabolites (waste). Platelet dense granules are found in blood platelets (they store and secrete adenosine nucleotides and serotonin). Defects in platelet dense granules lead to poor blood clotting and prolonged bleeding.

These three kinds of organelles, melanosomes, lysosomes, and platelet dense granules, all descend from a common ancestor organelle. Therefore, any mutation that affects this common ancestor will affect the descendants. The recessive red-eyed dilution mutation (r) has just this effect.

The red-eyed dilution mutation interferes with normal development of these organelles. This leads to abnormal transport of melanosomes within the pigment cell, which causes reduced pigment deposit in the hair and eyed -- hence the red eyes and pale fur. Homozygous rats with red-eyed dilution also have abnormal platelet function, called Platelet Storage Pool Deficiency (SPD) (LaVail 1981, Prieur 1984). In rats with SPD, platelets have defective secretion of clotting mediators, which leads to profuse bleeding (Raymond and Dodds 1975, Tschopp and Baumgartner 1977, Kirchmeier et al. 1990, Magro et al. 1992).

Red-eyed dilution is quite different from pink-eyed dilution, thoug the animals may have a similar appearance (though rr rats have reddish-brown eyes, while pp rats have truly pink eyes (LaVail 1981)). Genetically, however, these are quite distinct mutations that have very different effects.

Examples: An otherwise agouti rat homozygous for red-eyed dilution will be a golden tan called fawn (Prieur 1984)

Note: The red-eyed dilution of agouti isn't the only way to get a fawn colored rat. There is also a separate fawn mutation (f), which reduces pigmentation in both black and blue animals, though its cellular mechanism is unknown. Fawn on a black rat produces a coffee brown animal, while fawn on a blue animal produces a fawn animal (Castle and King 1947).

Other effects: Fawn (rr on agouti) hooded rats are used extensively in research, and have a whole list of associated disorders:

* hypertension (Rudofsky and Magro 1982, Kuijpers et al. 1986, Kuijpers and Jong 1986) leading to:
o proteinuria (protein in the urine) (Kuijpers et al. 1986, Kuijpers and Jong 1986)
o focal glomerular sclerosis (scarring of kidney tissue) (Kreisberg and Karnovsky 1978)
o kidney failure (de Keijzer et al. 1989)
* altered responsiveness of serotonergic mechanisms in the central nervous system (e.g. Gudelsky et al. 1985, Wang et al. 1988). For more details, see Hulilhan-Giglin, 1992, 1993, Chen and Lawrence 2000.
* alcoholism (Daoust et al. 1991, Overstreet et al. 1992, Rezvani et al. 2002).
* high social anxiety and low aggression (Kantor et al. 2000).

Fawn hooded rats have been used as an animal model for human psychiatric disorders involving anomalies in serotonin function, such as:

* depression (Overstreet et al. 1992, Rezvani et al. 2002)
* anxiety (Altemus 1994)
* obsessive-compulsive disorder
* eating disorders

Only the platelet storage disorder discussed above, and a serotonin uptake disorder (Tobach et al. 1984) have been shown to be caused by the red-eyed dilution gene (Hamada 1997, Fugimori et al. 1998, Prieur 1984). Many of these other disorders may be caused by other genes, which have come to be associated with these laboratory lineages of fawn rats (Overstreet and Rezvani 1996, Overstreet et al. 1999, Rezvani et al. 2002).

Human analogues: There are at least 15 mouse analogues, including: light ear, maroon, pallid, pearl, and ruby-eyed. Like red-eyed dilution, these analogous mutations affect melanosomes, platelet storage granules, and lysosomes. However, none of these analogous mutations are exactly the same mutation as red-eyed dilution. In other words, these analogues affect the same process but in different ways (Nguyen et al. 2002, Prieur 1984).

There are several human analogues that show platelet storage deficiency and depigmentation:

Hermansky-Pudlak syndrome (HPS). Individuals with HPS have a range of depigmentation, from white hair and skin to brown hair and skin due to many freckles. Individuals with HPS have decreased visual acuity and lung problems (pulmonary fibrosis) and intestinal problems (granulomatous colitis). HPS is caused by a problem in the membrane proteins of the three organelles mentioned above (melanosomes, lysosomes, and platelet storage granules) which result in defective transport. There are at least three different types of HPS (Huizing and Gahl 2002). It is rare in most human populations, but is the most common type of albinism in Puerto Rico. The mouse homologue of HPS is pale ear.

Chediak-Higashi syndrome (CHS). Humans with CHS show profound depigmentation of skin, severe recurrent infections, proliferation of lymphoid tissue (lymphoproliferative disorder) and numbness of the extremeties (progressive peripheral neuropathy). Individuals with CHS have giant melanosomes in their melanocytes and giant lysosomes in their white blood cells (leucocytes). This is a serious condition and many people with CHS die prematurely. CHS is also found in mink, cattle, mice and cats. The mouse homologue of CHS is beige. There is also at least one instance in the literature of beige rats with CHS symptoms (Ozaki et al. 1998)."

Again, you can read more about rat genetics here.