Jessie,

Hopefully you've had the incubator running so that it's up to temp (incubate at about 89-90). If not - it's not going to hurt to leave eggs with mom until it's running and you're certain that there are no temp fluctuations.

No holes in the egg box. Gently transfer the eggs to your eggbox with the Hatchrite, put some Glad Press & Seal over the top of the box, then add the lid.

I like to have my thermostat probe inside one of my egg boxes (got this tip from Kev and Kara).

Good luck!