It's not something that even a good breeder can prevent- & you also said this snake didn't visibly have it when you got him. Give up the blame game-& just accept that all living things may "catch things"- it's part of life- and when a snake is rehomed, it's very stressful. That stress lowers their ability to fight off infections, just as it does in humans & other animals- that's why it's recommended that new snakes be allowed to just settle in (eat & sleep, no handling & minimize stress) for the first several weeks- so that anything they may have come in contact with, they are better able to fight it off.
This [skin fungus] doesn't usually seem to spread fast, so if you want to wait & see if a shed "fixes" it, it won't hurt anything. Snakes don't exactly "get new scales" when they shed, they only lose the outer layer of their scales when the "shed" skin comes off. Issues like this usually remain.
That begs the question though- do you have a qualified (herp) vet in mind? If not, this may help you find one: https://arav.site-ym.com/search/custom.asp?id=3661