spreading water spots on eggs, what to do?

[Albert Clark]

I think the bad looking eggs are dying. One on the top is starting to collapse. Two eggs bottom of the pile are still looking good. Should I try to separate the bad ones or just leave them be?

No, leave them for now. Much to risky to try and separate eggs at this stage without ripping the integrity of the eggs. Idk if tilting the tubs was the best action but certainly moving them again and again should be avoided. Stay on top of your humidity percentage and temperatures and minimize opening the incubator.