Something similar happened to me a while back. Got the eggs in their egg box and then in the incubator and they made it fine.

http://ball-pythons.net/forums/showt...e-eggs-make-it

As long as you get the eggs into a proper egg box and at the proper temp they should be fine. Just make sure you don't turn the eggs or put them upside down. They must stay at the same orientation as they were found.