You definitely should not have removed them from the eggs!
Over the years I have had quite a few eggs leak...Patched them up and they were fine...One egg I just packed a bunch of Vermiculite around the slit and it hatched fine!
I remember ripping two eggs pulling them apart after they were laid...I put masking tape over each hole and they hatched fine...The masking tape did mold up a little by the time they hatched.
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